Single-cell Genomics Publications

Publications in Single-cell Genomics

Explore the most influential research papers and scholarly works that have shaped Single-cell Genomics. Use the concept filter below to focus on a specific sub-area of research.

Single-cell Genomics

3.1K

Publications

509.6K

Citations

Showing yearly statistics from 2000-2026.

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	Year	Citations
Comprehensive Integration of Single-Cell Data Tim Stuart, Andrew Butler, Paul Hoffman, Cell EngineeringBiomedical Data IntegrationData ScienceSingle Cell SequencingMedicine	2019	16K
Integrating single-cell transcriptomic data across different conditions, technologies, and species Andrew Butler, Paul Hoffman, Peter Smibert, Nature Biotechnology EngineeringGeneticsMultiomicsSingle-cell Transcriptomic DataTranscriptomics Technology	2018	14.1K
Fast, sensitive and accurate integration of single-cell data with Harmony Ilya Korsunsky, Nghia Millard, Jean Fan, Nature Methods BioinformaticsEngineeringData ScienceSingle Cell SequencingMedicine	2019	9.5K
Spatial reconstruction of single-cell gene expression data Rahul Satija, Jeffrey A. Farrell, David Gennert, Nature Biotechnology Functional GenomicsEngineeringSingle Cell SequencingMedicineSpatial Omics	2015	7.3K
SCENIC: single-cell regulatory network inference and clustering Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman, Nature Methods Functional GenomicsEngineeringMedicineBiological NetworkComputational Biology	2017	6.5K
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage Dvir Aran, Agnieszka Looney, Leqian Liu, Nature Immunology Lung Single-cell SequencingReference-based AnalysisTransitional Profibrotic MacrophageInflammatory Lung DiseaseSingle Cell Sequencing	2019	5K
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq Itay Tirosh, Benjamin Izar, Sanjay M. Prakadan, Science Melanoma TumorsImmunologyBiological MicroenvironmentsTumor BiologyOncology	2016	5K
The single-cell transcriptional landscape of mammalian organogenesis Junyue Cao, Malte Spielmann, Xiaojie Qiu, Nature Cell LineageDevelopmental BiologySingle Cell SequencingMedicineSingle-cell Transcriptional Landscape	2019	4.4K
Full-length RNA-seq from single cells using Smart-seq2 Simone Picelli, Omid R. Faridani, Åsa K. Björklund, Nature Protocols Functional GenomicsSingle Cell SequencingMedicineRna SequencingSingle-cell Genomics	2014	4.3K
DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors Christopher S. McGinnis, Lyndsay M. Murrow, Zev J. Gartner Cell Systems Doublet DetectionFunctional GenomicsSequencingEngineeringSingle Cell Sequencing	2019	4.2K
Dictionary learning for integrative, multimodal and scalable single-cell analysis Yuhan Hao, Tim Stuart, Madeline H. Kowalski, Nature Biotechnology EngineeringMachine LearningDeep LearningSingle Cell SequencingMedicine	2023	3.9K
mRNA-Seq whole-transcriptome analysis of a single cell Fuchou Tang, Cátálin Bárbácioru, Yangzhou Wang, Nature Methods Single Cell SequencingMedicineSingle-cell BiologySingle-cell GenomicsTranscriptomics Technology	2009	3.9K

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